bioDBnet: dbOrg

Organism wide Identifier Conversions

dbOrg offers organism wide coversions. In order to get these conversions all the input identifiers for the organism of interest are obtained from the input database and then db2db is run to get the conversions to the required output identifier. As the process takes up considerable memory and time it is run once a month on one of our servers and the results are made available as download links. The conversions provided are for databases that we thought would be most useful. Please let us know if any conversions that you would like are missing and we will try to include it in our next run.

The file format is (input_identifier)_to_(output_identifier)_(organism_taxon_ID). The input and output database versions refer to the database versions at the time the conversions were run. Release date of the database is substituted for databases missing the version information. Please note that although all the input identifiers are obtained from the input database not all output identifiers are from the output database. bioDBnet follows many paths and traverses many databases to run the conversions and so the output database and version columns are more for information purposes and may not be the actual versions of the results obtained

File NameInput DatabaseInput VersionOutput DatabaseOutput Version
Affy_ID__to__Gene_ID_9606affy35gene03-NOV-15
Affy_ID__to__Ensembl_Gene_ID_9606affy35ensembl82
Affy_ID__to__UniProt_Accession_9606affy35uniprot201508
Affy_ID__to__UniProt_Entry_Name_9606affy35uniprot201508
Ensembl_Gene_ID__to__Gene_ID_9606ensembl82gene03-NOV-15
Ensembl_Gene_ID__to__Gene_Symbol_9606ensembl89gene06-AUG-17
Ensembl_Gene_ID__to__GO_-_Cellular_Component_9606ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Molecular_Function_9606ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Biological_Process_9606ensembl82go10-SEP-15
Ensembl_Gene_ID__to__RefSeq_mRNA_Accession_9606ensembl82refn71
Ensembl_Gene_ID__to__RefSeq_Protein_Accession_9606ensembl82refp72
Ensembl_Gene_ID__to__UniGene_ID_9606ensembl82unigene30-JUN-14
Ensembl_Gene_ID__to__UniProt_Entry_Name_9606ensembl82uniprot201508
Ensembl_Gene_ID__to__HGNC_ID_9606ensembl82ensembl82
Ensembl_Transcript_ID__to__Ensembl_Gene_ID_9606ensembl82ensembl82
Ensembl_Transcript_ID__to__Ensembl_Protein_ID_9606ensembl82ensembl82
Ensembl_Transcript_ID__to__Gene_ID_9606ensembl82gene03-NOV-15
Ensembl_Transcript_ID__to__RefSeq_mRNA_Accession_9606ensembl82refn71
Ensembl_Transcript_ID__to__RefSeq_Protein_Accession_9606ensembl82refp72
Ensembl_Transcript_ID__to__UniProt_Entry_Name_9606ensembl82uniprot201508
Ensembl_Protein_ID__to__Ensembl_Gene_ID_9606ensembl82ensembl82
Ensembl_Protein_ID__to__Ensembl_Transcript_ID_9606ensembl82ensembl82
Ensembl_Protein_ID__to__Gene_ID_9606ensembl82gene03-NOV-15
Ensembl_Protein_ID__to__RefSeq_mRNA_Accession_9606ensembl82refn71
Ensembl_Protein_ID__to__RefSeq_Protein_Accession_9606ensembl82refp72
Ensembl_Protein_ID__to__UniProt_Entry_Name_9606ensembl82uniprot201508
Gene_ID__to__Biocarta_Pathway_Name_9606gene03-NOV-15biocarta14-APR-08
Gene_ID__to__Ensembl_Gene_ID_9606gene03-NOV-15ensembl82
Gene_ID__to__GenBank_Nucleotide_Accession_9606gene03-NOV-15GBK210.0
Gene_ID__to__GO_-_Cellular_Component_9606gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Molecular_Function_9606gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Biological_Process_9606gene03-NOV-15go10-SEP-15
Gene_ID__to__RefSeq_mRNA_Accession_9606gene03-NOV-15refn71
Gene_ID__to__RefSeq_Protein_Accession_9606gene03-NOV-15refp72
Gene_ID__to__UniGene_ID_9606gene03-NOV-15unigene30-JUN-14
Gene_ID__to__UniProt_Accession_9606gene03-NOV-15uniprot201508
Gene_ID__to__UniProt_Entry_Name_9606gene03-NOV-15uniprot201508
Gene_Symbol__to__HGNC_ID_9606gene10-AUG-17ensembl89
GO_ID__to__Gene_ID_9606go10-SEP-15gene03-NOV-15
GO_ID__to__Gene_Symbol_9606go10-SEP-15gene03-NOV-15
Illumina_ID__to__Gene_ID_9606ensembl82gene03-NOV-15
Illumina_ID__to__Ensembl_Gene_ID_9606ensembl82ensembl82
Illumina_ID__to__UniProt_Accession_9606ensembl82uniprot201508
Illumina_ID__to__UniProt_Entry_Name_9606ensembl82uniprot201508
RefSeq_mRNA_Accession__to__Gene_ID_9606refn71gene03-NOV-15
RefSeq_mRNA_Accession__to__Ensembl_Gene_ID_9606refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Transcript_ID_9606refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Protein_ID_9606refn71ensembl82
RefSeq_Protein_Accession__to__Gene_ID_9606refp72gene03-NOV-15
RefSeq_Protein_Accession__to__Ensembl_Gene_ID_9606refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Transcript_ID_9606refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Protein_ID_9606refp72ensembl82
UniGene_ID__to__Gene_ID_9606unigene30-JUN-14gene03-NOV-15
UniProt_Accession__to__UniProt_Entry_Name_9606uniprot201508uniprot201508
UniProt_Accession__to__Gene_ID_9606uniprot201508gene03-NOV-15
UniProt_Accession__to__RefSeq_Protein_Accession_9606uniprot201508refp72
UniProt_Accession__to__UniGene_ID_9606uniprot201508unigene30-JUN-14
UniProt_Entry_Name__to__Ensembl_Gene_ID_9606uniprot201508ensembl82
UniProt_Entry_Name__to__Gene_ID_9606uniprot201508gene03-NOV-15
UniProt_Entry_Name__to__RefSeq_Protein_Accession_9606uniprot201508refp72
UniProt_Entry_Name__to__UniGene_ID_9606uniprot201508unigene30-JUN-14
Affy_ID__to__Gene_ID_10090affy35gene03-NOV-15
Affy_ID__to__Ensembl_Gene_ID_10090affy35ensembl82
Affy_ID__to__UniProt_Accession_10090affy35uniprot201508
Affy_ID__to__UniProt_Entry_Name_10090affy35uniprot201508
Ensembl_Gene_ID__to__Gene_ID_10090ensembl82gene03-NOV-15
Ensembl_Gene_ID__to__Gene_Symbol_10090ensembl89gene06-AUG-17
Ensembl_Gene_ID__to__GO_-_Cellular_Component_10090ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Molecular_Function_10090ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Biological_Process_10090ensembl82go10-SEP-15
Ensembl_Gene_ID__to__RefSeq_mRNA_Accession_10090ensembl82refn71
Ensembl_Gene_ID__to__RefSeq_Protein_Accession_10090ensembl82refp72
Ensembl_Gene_ID__to__UniGene_ID_10090ensembl82unigene30-JUN-14
Ensembl_Gene_ID__to__UniProt_Entry_Name_10090ensembl82uniprot201508
Ensembl_Transcript_ID__to__Ensembl_Gene_ID_10090ensembl82ensembl82
Ensembl_Transcript_ID__to__Ensembl_Protein_ID_10090ensembl82ensembl82
Ensembl_Transcript_ID__to__Gene_ID_10090ensembl82gene03-NOV-15
Ensembl_Transcript_ID__to__RefSeq_mRNA_Accession_10090ensembl82refn71
Ensembl_Transcript_ID__to__RefSeq_Protein_Accession_10090ensembl82refp72
Ensembl_Transcript_ID__to__UniProt_Entry_Name_10090ensembl82uniprot201508
Ensembl_Protein_ID__to__Ensembl_Gene_ID_10090ensembl82ensembl82
Ensembl_Protein_ID__to__Ensembl_Transcript_ID_10090ensembl82ensembl82
Ensembl_Protein_ID__to__Gene_ID_10090ensembl82gene03-NOV-15
Ensembl_Protein_ID__to__RefSeq_mRNA_Accession_10090ensembl82refn71
Ensembl_Protein_ID__to__RefSeq_Protein_Accession_10090ensembl82refp72
Ensembl_Protein_ID__to__UniProt_Entry_Name_10090ensembl82uniprot201508
Gene_ID__to__Biocarta_Pathway_Name_10090gene03-NOV-15biocarta14-APR-08
Gene_ID__to__Ensembl_Gene_ID_10090gene03-NOV-15ensembl82
Gene_ID__to__GenBank_Nucleotide_Accession_10090gene03-NOV-15GBK210.0
Gene_ID__to__GO_-_Cellular_Component_10090gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Molecular_Function_10090gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Biological_Process_10090gene03-NOV-15go10-SEP-15
Gene_ID__to__RefSeq_mRNA_Accession_10090gene03-NOV-15refn71
Gene_ID__to__RefSeq_Protein_Accession_10090gene03-NOV-15refp72
Gene_ID__to__UniGene_ID_10090gene03-NOV-15unigene30-JUN-14
Gene_ID__to__UniProt_Accession_10090gene03-NOV-15uniprot201508
Gene_ID__to__UniProt_Entry_Name_10090gene03-NOV-15uniprot201508
GO_ID__to__Gene_ID_10090go10-SEP-15gene03-NOV-15
GO_ID__to__Gene_Symbol_10090go10-SEP-15
Illumina_ID__to__Gene_ID_10090ensembl82gene03-NOV-15
Illumina_ID__to__Ensembl_Gene_ID_10090ensembl82ensembl82
Illumina_ID__to__UniProt_Accession_10090ensembl82uniprot201508
Illumina_ID__to__UniProt_Entry_Name_10090ensembl82uniprot201508
RefSeq_mRNA_Accession__to__Gene_ID_10090refn71gene03-NOV-15
RefSeq_mRNA_Accession__to__Ensembl_Gene_ID_10090refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Transcript_ID_10090refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Protein_ID_10090refn71ensembl82
RefSeq_Protein_Accession__to__Gene_ID_10090refp72gene03-NOV-15
RefSeq_Protein_Accession__to__Ensembl_Gene_ID_10090refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Transcript_ID_10090refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Protein_ID_10090refp72ensembl82
UniGene_ID__to__Gene_ID_10090unigene30-JUN-14gene03-NOV-15
UniProt_Accession__to__UniProt_Entry_Name_10090uniprot201508uniprot201508
UniProt_Accession__to__Gene_ID_10090uniprot201508gene03-NOV-15
UniProt_Accession__to__RefSeq_Protein_Accession_10090uniprot201508refp72
UniProt_Accession__to__UniGene_ID_10090uniprot201508unigene30-JUN-14
UniProt_Entry_Name__to__Ensembl_Gene_ID_10090uniprot201508ensembl82
UniProt_Entry_Name__to__Gene_ID_10090uniprot201508gene03-NOV-15
UniProt_Entry_Name__to__RefSeq_Protein_Accession_10090uniprot201508refp72
UniProt_Entry_Name__to__UniGene_ID_10090uniprot201508unigene30-JUN-14
Affy_ID__to__Gene_ID_7955affy35gene03-NOV-15
Affy_ID__to__Ensembl_Gene_ID_7955affy35ensembl82
Affy_ID__to__UniProt_Accession_7955affy35uniprot201508
Affy_ID__to__UniProt_Entry_Name_7955affy35uniprot201508
Ensembl_Gene_ID__to__Gene_ID_7955ensembl82gene03-NOV-15
Ensembl_Gene_ID__to__Gene_Symbol_7955ensembl89gene06-AUG-17
Ensembl_Gene_ID__to__GO_-_Cellular_Component_7955ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Molecular_Function_7955ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Biological_Process_7955ensembl82go10-SEP-15
Ensembl_Gene_ID__to__RefSeq_mRNA_Accession_7955ensembl82refn71
Ensembl_Gene_ID__to__RefSeq_Protein_Accession_7955ensembl82refp72
Ensembl_Gene_ID__to__UniGene_ID_7955ensembl82unigene30-JUN-14
Ensembl_Gene_ID__to__UniProt_Entry_Name_7955ensembl82uniprot201508
Ensembl_Transcript_ID__to__Ensembl_Gene_ID_7955ensembl82ensembl82
Ensembl_Transcript_ID__to__Ensembl_Protein_ID_7955ensembl82ensembl82
Ensembl_Transcript_ID__to__Gene_ID_7955ensembl82gene03-NOV-15
Ensembl_Transcript_ID__to__RefSeq_mRNA_Accession_7955ensembl82refn71
Ensembl_Transcript_ID__to__RefSeq_Protein_Accession_7955ensembl82refp72
Ensembl_Transcript_ID__to__UniProt_Entry_Name_7955ensembl82uniprot201508
Ensembl_Protein_ID__to__Ensembl_Gene_ID_7955ensembl82ensembl82
Ensembl_Protein_ID__to__Ensembl_Transcript_ID_7955ensembl82ensembl82
Ensembl_Protein_ID__to__Gene_ID_7955ensembl82gene03-NOV-15
Ensembl_Protein_ID__to__RefSeq_mRNA_Accession_7955ensembl82refn71
Ensembl_Protein_ID__to__RefSeq_Protein_Accession_7955ensembl82refp72
Ensembl_Protein_ID__to__UniProt_Entry_Name_7955ensembl82uniprot201508
Gene_ID__to__Biocarta_Pathway_Name_7955gene03-NOV-15biocarta14-APR-08
Gene_ID__to__Ensembl_Gene_ID_7955gene03-NOV-15ensembl82
Gene_ID__to__GenBank_Nucleotide_Accession_7955gene03-NOV-15GBK210.0
Gene_ID__to__GO_-_Cellular_Component_7955gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Molecular_Function_7955gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Biological_Process_7955gene03-NOV-15go10-SEP-15
Gene_ID__to__RefSeq_mRNA_Accession_7955gene03-NOV-15refn71
Gene_ID__to__RefSeq_Protein_Accession_7955gene03-NOV-15refp72
Gene_ID__to__UniGene_ID_7955gene03-NOV-15unigene30-JUN-14
Gene_ID__to__UniProt_Accession_7955gene03-NOV-15uniprot201508
Gene_ID__to__UniProt_Entry_Name_7955gene03-NOV-15uniprot201508
GO_ID__to__Gene_ID_7955go10-SEP-15gene03-NOV-15
GO_ID__to__Gene_Symbol_7955go10-SEP-15
Illumina_ID__to__Gene_ID_7955ensembl82gene03-NOV-15
Illumina_ID__to__Ensembl_Gene_ID_7955ensembl82ensembl82
Illumina_ID__to__UniProt_Accession_7955ensembl82uniprot201508
Illumina_ID__to__UniProt_Entry_Name_7955ensembl82uniprot201508
RefSeq_mRNA_Accession__to__Gene_ID_7955refn71gene03-NOV-15
RefSeq_mRNA_Accession__to__Ensembl_Gene_ID_7955refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Transcript_ID_7955refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Protein_ID_7955refn71ensembl82
RefSeq_Protein_Accession__to__Gene_ID_7955refp72gene03-NOV-15
RefSeq_Protein_Accession__to__Ensembl_Gene_ID_7955refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Transcript_ID_7955refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Protein_ID_7955refp72ensembl82
UniGene_ID__to__Gene_ID_7955unigene30-JUN-14gene03-NOV-15
UniProt_Accession__to__UniProt_Entry_Name_7955uniprot201508uniprot201508
UniProt_Accession__to__Gene_ID_7955uniprot201508gene03-NOV-15
UniProt_Accession__to__RefSeq_Protein_Accession_7955uniprot201508refp72
UniProt_Accession__to__UniGene_ID_7955uniprot201508unigene30-JUN-14
UniProt_Entry_Name__to__Ensembl_Gene_ID_7955uniprot201508ensembl82
UniProt_Entry_Name__to__Gene_ID_7955uniprot201508gene03-NOV-15
UniProt_Entry_Name__to__RefSeq_Protein_Accession_7955uniprot201508refp72
UniProt_Entry_Name__to__UniGene_ID_7955uniprot201508unigene30-JUN-14
Affy_ID__to__Gene_ID_10116affy35gene03-NOV-15
Affy_ID__to__Ensembl_Gene_ID_10116affy35ensembl82
Affy_ID__to__UniProt_Accession_10116affy35uniprot201508
Affy_ID__to__UniProt_Entry_Name_10116affy35uniprot201508
Ensembl_Gene_ID__to__Gene_ID_10116ensembl82gene03-NOV-15
Ensembl_Gene_ID__to__Gene_Symbol_10116ensembl89gene06-AUG-17
Ensembl_Gene_ID__to__GO_-_Cellular_Component_10116ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Molecular_Function_10116ensembl82go10-SEP-15
Ensembl_Gene_ID__to__GO_-_Biological_Process_10116ensembl82go10-SEP-15
Ensembl_Gene_ID__to__RefSeq_mRNA_Accession_10116ensembl82refn71
Ensembl_Gene_ID__to__RefSeq_Protein_Accession_10116ensembl82refp72
Ensembl_Gene_ID__to__UniGene_ID_10116ensembl82unigene30-JUN-14
Ensembl_Gene_ID__to__UniProt_Entry_Name_10116ensembl82uniprot201508
Ensembl_Transcript_ID__to__Ensembl_Gene_ID_10116ensembl82ensembl82
Ensembl_Transcript_ID__to__Ensembl_Protein_ID_10116ensembl82ensembl82
Ensembl_Transcript_ID__to__Gene_ID_10116ensembl82gene03-NOV-15
Ensembl_Transcript_ID__to__RefSeq_mRNA_Accession_10116ensembl82refn71
Ensembl_Transcript_ID__to__RefSeq_Protein_Accession_10116ensembl82refp72
Ensembl_Transcript_ID__to__UniProt_Entry_Name_10116ensembl82uniprot201508
Ensembl_Protein_ID__to__Ensembl_Gene_ID_10116ensembl82ensembl82
Ensembl_Protein_ID__to__Ensembl_Transcript_ID_10116ensembl82ensembl82
Ensembl_Protein_ID__to__Gene_ID_10116ensembl82gene03-NOV-15
Ensembl_Protein_ID__to__RefSeq_mRNA_Accession_10116ensembl82refn71
Ensembl_Protein_ID__to__RefSeq_Protein_Accession_10116ensembl82refp72
Ensembl_Protein_ID__to__UniProt_Entry_Name_10116ensembl82uniprot201508
Gene_ID__to__Biocarta_Pathway_Name_10116gene03-NOV-15biocarta14-APR-08
Gene_ID__to__Ensembl_Gene_ID_10116gene03-NOV-15ensembl82
Gene_ID__to__GenBank_Nucleotide_Accession_10116gene03-NOV-15GBK210.0
Gene_ID__to__GO_-_Cellular_Component_10116gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Molecular_Function_10116gene03-NOV-15go10-SEP-15
Gene_ID__to__GO_-_Biological_Process_10116gene03-NOV-15go10-SEP-15
Gene_ID__to__RefSeq_mRNA_Accession_10116gene03-NOV-15refn71
Gene_ID__to__RefSeq_Protein_Accession_10116gene03-NOV-15refp72
Gene_ID__to__UniGene_ID_10116gene03-NOV-15unigene30-JUN-14
Gene_ID__to__UniProt_Accession_10116gene03-NOV-15uniprot201508
Gene_ID__to__UniProt_Entry_Name_10116gene03-NOV-15uniprot201508
GO_ID__to__Gene_ID_10116go10-SEP-15gene03-NOV-15
GO_ID__to__Gene_Symbol_10116go10-SEP-15
Illumina_ID__to__Gene_ID_10116ensembl82gene03-NOV-15
Illumina_ID__to__Ensembl_Gene_ID_10116ensembl82ensembl82
Illumina_ID__to__UniProt_Accession_10116ensembl82uniprot201508
Illumina_ID__to__UniProt_Entry_Name_10116ensembl82uniprot201508
RefSeq_mRNA_Accession__to__Gene_ID_10116refn71gene03-NOV-15
RefSeq_mRNA_Accession__to__Ensembl_Gene_ID_10116refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Transcript_ID_10116refn71ensembl82
RefSeq_mRNA_Accession__to__Ensembl_Protein_ID_10116refn71ensembl82
RefSeq_Protein_Accession__to__Gene_ID_10116refp72gene03-NOV-15
RefSeq_Protein_Accession__to__Ensembl_Gene_ID_10116refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Transcript_ID_10116refp72ensembl82
RefSeq_Protein_Accession__to__Ensembl_Protein_ID_10116refp72ensembl82
UniGene_ID__to__Gene_ID_10116unigene30-JUN-14gene03-NOV-15
UniProt_Accession__to__UniProt_Entry_Name_10116uniprot201508uniprot201508
UniProt_Accession__to__Gene_ID_10116uniprot201508gene03-NOV-15
UniProt_Accession__to__RefSeq_Protein_Accession_10116uniprot201508refp72
UniProt_Accession__to__UniGene_ID_10116uniprot201508unigene30-JUN-14
UniProt_Entry_Name__to__Ensembl_Gene_ID_10116uniprot201508ensembl82
UniProt_Entry_Name__to__Gene_ID_10116uniprot201508gene03-NOV-15
UniProt_Entry_Name__to__RefSeq_Protein_Accession_10116uniprot201508refp72
UniProt_Entry_Name__to__UniGene_ID_10116uniprot201508unigene30-JUN-14